Improvement of Low-Density Microelectronic Array Technology to Characterize 14 Mutations/Single-Nucleotide Polymorphisms from Several Human Genes on a Large Scale
Author(s) -
Sabrina Frusconi,
Betti Giusti,
Luciana Rossi,
Sara Bernabini,
Filippo Poggi,
Irene Giotti,
Rosanna Abbate,
Guglielmina Pepe,
Francesca Torricelli
Publication year - 2004
Publication title -
clinical chemistry
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.705
H-Index - 218
eISSN - 1530-8561
pISSN - 0009-9147
DOI - 10.1373/clinchem.2003.025197
Subject(s) - snp genotyping , amplicon , dna microarray , single nucleotide polymorphism , genotyping , genomic dna , biology , genetics , molecular inversion probe , gene chip analysis , dna , microbiology and biotechnology , genotype , gene , polymerase chain reaction , gene expression
peaks, which indicate the presence or absenceof a PCR product, to be strategically placed within thetypical melting curve range of 45–70 °C for hybridizationprobes. Over this melting curve range we feel it should bepossible to clearly distinguish three peaks in a singlechannel. This potentially makes it possible to multiplexsix mutations in two capillaries when both fluorescentchannels are used. This enhances the capabilities of theLightCycler for mutation detection; similar strategiescould also be used for other real-time systems.The results presented here demonstrate the ability tocarry out multiplex mutation detection by use of a com-bination of ARMS PCR and real-time detection. A labora-tory currently using ARMS PCR in a diagnostic settingcan quite easily convert the standard ARMS PCR to areal-time ARMS PCR. This could have a major advantagein time savings and reduce the handling of potentialcarcinogenic ethidium bromide.
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