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Antimicrobial resistant  Escherichia coli  (n=331) isolates from humans with bloodstream infections were investigated for the presence of class 1 and class 2 integrons. The integron cassettes arrays were characterized and the findings were compared with data from similar investigations on resistant  E .  coli  from meat and meat products (n=241) produced during the same time period. All isolates were obtained from the Norwegian monitoring programs for antimicrobial resistance in human pathogens and in the veterinary sector. Methods used included PCR, sequencing, conjugation experiments, plasmid replicon typing and subtyping, pulsed-field-gel-electrophoresis and serotyping. Integrons of class 1 and 2 occurred significantly more frequently among human isolates; 45.4% (95% CI: 39.9-50.9) than among isolates from meat; 18% (95% CI: 13.2 -23.3), ( p <0.01, Chi-square test). Identical cassette arrays including  dfrA1-aadA1 ,  aadA1 ,  dfrA12 -orfF- aadA2 ,  oxa-30-aadA1  (class 1 integrons) and  dfrA1-sat1-aadA1  (class 2 integrons) were detected from both humans and meat. However, the most prevalent cassette array in human isolates,  dfrA17-aadA5 , did not occur in isolates from meat, suggesting a possible linkage between this class 1 integron and a subpopulation of  E .  coli  adapted to a human host. The  drfA1-aadA1  and  aadA1  class 1 integrons were found frequently in both human and meat isolates. These isolates were subjected to further studies to investigate similarities with regard to transferability, plasmid and host strain characteristics. We detected incF plasmids with pMLST profile F24:A-:B1 carrying  drfA1-aadA1  integrons in isolates from pork and in a more distantly related  E .  coli  strain from a human with septicaemia. Furthermore, we showed that most of the class 1 integrons with  aadA1  were located on incF plasmids with pMLST profile F51:A-:B10 in human isolates. The plasmid was present in unrelated as well as closely related host strains, demonstrating that dissemination of this integron also could be attributed to clonal spread. In conclusion, among the systematically collected isolates from two different sources, some significant differences concerning integron prevalence and integron variants were observed. However, closely related plasmids as vehicles for specific class 1 integrons in isolates from meat and from a human with bloodstream infection were found. The occurrence of similar multi-resistance plasmids in bacteria from a food source and from a human clinical sample highlights the possible role of meat as a source of resistance elements for pathogenic bacteria.

plos one

Integron, Plasmid and Host Strain Characteristics of Escherichia coli from Humans and Food Included in the Norwegian Antimicrobial Resistance Monitoring Programs