High Resolution Melting Analysis: A Rapid Screening and Typing Tool for Common β-Thalassemia Mutation in Chinese Population
Author(s) -
Min Lin,
Ji-Wei Jiao,
Xiu-Hui Zhan,
Xiao-Fen Zhan,
Meichen Pan,
Junli Wang,
Chunfang Wang,
Tianyu Zhong,
Qin Zhang,
Xia Yu,
Jiao-Ren Wu,
Hui-Tian Yang,
Fen Lin,
Xin Tong,
Hui Yang,
GuangCai Zha,
Qian Wang,
Lei Zheng,
Ying-Fang Wen,
Li–Ye Yang
Publication year - 2014
Publication title -
plos one
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.99
H-Index - 332
ISSN - 1932-6203
DOI - 10.1371/journal.pone.0102243
Subject(s) - high resolution melt , genotyping , thalassemia , compound heterozygosity , heterozygote advantage , concordance , beta thalassemia , genetics , melting curve analysis , biology , gene mutation , mutation , microbiology and biotechnology , genotype , medicine , polymerase chain reaction , gene
β-thalassemia is a common inherited disorder worldwide including southern China, and at least 45 distinct β-thalassemia mutations have been identified in China. High-resolution melting (HRM) assay was recently introduced as a rapid, inexpensive and effective method for genotyping. However, there was no systemic study on the diagnostic capability of HRM to identify β-thalassemia. Here, we used an improved HRM method to screen and type 12 common β-thalassemia mutations in Chinese, and the rapidity and reliability of this method was investigated. The whole PCR and HRM procedure could be completed in 40 min. The heterozygous mutations and 4 kinds of homozygous mutations could be readily differentiated from the melting curve except c.-78A>G heterozygote and c.-79A>G heterozygote. The diagnostic reliability of this HRM assay was evaluated on 756 pre-typed genomic DNA samples and 50 cases of blood spots on filter paper, which were collected from seven high prevalent provinces in southern China. If c.-78A>G heterozygote and c.-79A>G heterozygote were classified into the same group (c.-78&79 A>G heterozygote), the HRM method was in complete concordance with the reference method (reverse dot blot/DNA-sequencing). In a conclusion, the HRM method appears to be an accurate and sensitive method for the rapid screening and identification of β-thalassemia mutations. In the future, we suggest this technology to be used in neonatal blood spot screening program. It could enlarge the coverage of β-thalassemia screening program in China. At the same time, its value should be confirmed in prospectively clinical and epidemiological studies.
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