The First Complete Genome Sequence of the Class Fimbriimonadia in the Phylum Armatimonadetes
Author(s) -
Ziye Hu,
Yuezhu Wang,
WanTaek Im,
Shengyue Wang,
Guoping Zhao,
Huajun Zheng,
ZheXue Quan
Publication year - 2014
Publication title -
plos one
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.99
H-Index - 332
ISSN - 1932-6203
DOI - 10.1371/journal.pone.0100794
Subject(s) - genetics , biology , phylum , genome , ribosomal rna , phylogenetic tree , gene , prophage , operon , evolutionary biology , escherichia coli , bacteriophage
In this study, we present the complete genome of Fimbriimonas ginsengisoli Gsoil 348 T belonging to the class Fimbriimonadia of the phylum Armatimonadetes , formerly called as candidate phylum OP10. The complete genome contains a single circular chromosome of 5.23 Mb including a 45.5 kb prophage. Of the 4820 open reading frames (ORFs), 3,000 (62.2%) genes could be classified into Clusters of Orthologous Groups (COG) families. With the split of rRNA genes, strain Gsoil 348 T had no typical 16S-23S-5S ribosomal RNA operon. In this genome, the GC skew inversion which was usually observed in archaea was found. The predicted gene functions suggest that the organism lacks the ability to synthesize histidine, and the TCA cycle is incomplete. Phylogenetic analyses based on ribosomal proteins indicated that strain Gsoil 348 T represents a deeply branching lineage of sufficient divergence with other phyla, but also strongly involved in superphylum Terrabacteria .
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