Adaptive Models for Gene Networks
Author(s) -
Yong-Jun Shin,
Ali H. Sayed,
Xiling Shen
Publication year - 2012
Publication title -
plos one
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.99
H-Index - 332
ISSN - 1932-6203
DOI - 10.1371/journal.pone.0031657
Subject(s) - biological network , computer science , invariant (physics) , lti system theory , systems biology , gene regulatory network , computational model , algorithm , biological system , computational biology , mathematics , biology , linear system , gene , genetics , mathematical analysis , mathematical physics , gene expression
Biological systems are often treated as time-invariant by computational models that use fixed parameter values. In this study, we demonstrate that the behavior of the p53-MDM2 gene network in individual cells can be tracked using adaptive filtering algorithms and the resulting time-variant models can approximate experimental measurements more accurately than time-invariant models. Adaptive models with time-variant parameters can help reduce modeling complexity and can more realistically represent biological systems.
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