
Consequences of HSF knockdown on gene expression during the heat shock response in Tigriopus californicus
Author(s) -
Alice E. Harada,
Ronald S. Burton
Publication year - 2020
Publication title -
journal of experimental biology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.367
H-Index - 185
eISSN - 1477-9145
pISSN - 0022-0949
DOI - 10.1242/jeb.208611
Subject(s) - gene knockdown , biology , heat shock , gene , heat shock protein , rna interference , transcription factor , gene expression , genetics , heat shock factor , microbiology and biotechnology , hsf1 , regulation of gene expression , rna , hsp70
Although the existence of a cellular heat shock response is nearly universal, its relationship to organismal thermal tolerance is not completely understood. Many of the genes involved are known to be regulated by the highly conserved heat shock transcription factor-1 (HSF-1), yet the regulatory network is not fully characterized. Here we investigate the role of HSF-1 in gene expression following thermal stress using knockdown of HSF-1 by RNA interference (RNAi) in the intertidal copepod Tigriopus californicus. We observed some evidence for decreased transcription of heat shock protein genes following knockdown, supporting the widely acknowledged role of HSF-1 in the heat shock response. However, the majority of differentially expressed genes between the control and HSF-1 knockdown groups were upregulated, suggesting that HSF-1 normally functions to repress their expression. Differential expression observed in genes related to chitin and cuticle formation lends support to previous findings that these processes are highly regulated following heat stress. We performed a genome scan and identified a set of 396 genes associated with canonical heat shock elements. RNA-seq data did not find those genes to be more highly represented in our HSF-1 knockdown treatment, indicating that requirements for binding and interaction of HSF-1 with a given gene are not simply predicted by the presence of HSF-1 binding sites. Further study of the pathways implicated by these results and future comparisons among populations of T. californicus may help us understand the role and importance of HSF-1 in the heat shock response and, more broadly, in organismal thermal tolerance.