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Models of signalling networks – what cell biologists can gain from them and give to them
Author(s) -
Kevin A. Janes,
Douglas A. Lauffenburger
Publication year - 2013
Publication title -
journal of cell science
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 2.384
H-Index - 278
eISSN - 1477-9137
pISSN - 0021-9533
DOI - 10.1242/jcs.112045
Subject(s) - complement (music) , biology , signalling , computational model , strengths and weaknesses , signalling pathways , computer science , work (physics) , cognitive science , computational biology , data science , management science , artificial intelligence , epistemology , microbiology and biotechnology , signal transduction , mechanical engineering , psychology , biochemistry , philosophy , complementation , gene , engineering , economics , phenotype
Computational models of cell signalling are perceived by many biologists to be prohibitively complicated. Why do math when you can simply do another experiment? Here, we explain how conceptual models, which have been formulated mathematically, have provided insights that directly advance experimental cell biology. In the past several years, models have influenced the way we talk about signalling networks, how we monitor them, and what we conclude when we perturb them. These insights required wet-lab experiments but would not have arisen without explicit computational modelling and quantitative analysis. Today, the best modellers are cross-trained investigators in experimental biology who work closely with collaborators but also undertake experimental work in their own laboratories. Biologists would benefit by becoming conversant in core principles of modelling in order to identify when a computational model could be a useful complement to their experiments. Although the mathematical foundations of a model are useful to appreciate its strengths and weaknesses, they are not required to test or generate a worthwhile biological hypothesis computationally.

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