Probabilistic subgroup identification using Bayesian finite mixture modelling: A case study in Parkinson's disease phenotype identification
Author(s) -
Nicole White,
H. L. Johnson,
Peter A. Silburn,
George D. Mellick,
N. Dissanayaka,
Kerrie Mengersen
Publication year - 2010
Publication title -
statistical methods in medical research
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.952
H-Index - 85
eISSN - 1477-0334
pISSN - 0962-2802
DOI - 10.1177/0962280210391012
Subject(s) - identification (biology) , bayesian probability , probabilistic logic , covariate , disease , posterior probability , statistics , statistical model , scale (ratio) , econometrics , computer science , mathematics , data mining , artificial intelligence , medicine , geography , pathology , cartography , botany , biology
This article explores the use of probabilistic classification, namely finite mixture modelling, for identification of complex disease phenotypes, given cross-sectional data. In particular, if focuses on posterior probabilities of subgroup membership, a standard output of finite mixture modelling, and how the quantification of uncertainty in these probabilities can lead to more detailed analyses. Using a Bayesian approach, we describe two practical uses of this uncertainty: (i) as a means of describing a person's membership to a single or multiple latent subgroups and (ii) as a means of describing identified subgroups by patient-centred covariates not included in model estimation. These proposed uses are demonstrated on a case study in Parkinson's disease (PD), where latent subgroups are identified using multiple symptoms from the Unified Parkinson's Disease Rating Scale (UPDRS).
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