Evaluating the Influence of Quality Control Decisions and Software Algorithms on SNP Calling for the Affymetrix 6.0 SNP Array Platform | Zendy

Mariza de Andrade | Zendy; Elizabeth J. Atkinson | Zendy; William R. Bamlet | Zendy; Martha Matsumoto | Zendy; Sooraj Maharjan | Zendy; Susan L. Slager | Zendy; Celine M. Vachon | Zendy; Julie M. Cunningham | Zendy; Sharon L.R. Kardia | Zendy

Open Access

Evaluating the Influence of Quality Control Decisions and Software Algorithms on SNP Calling for the Affymetrix 6.0 SNP Array Platform

Author(s) -

Mariza de Andrade,

Elizabeth J. Atkinson,

William R. Bamlet,

Martha Matsumoto,

Sooraj Maharjan,

Susan L. Slager,

Celine M. Vachon,

Julie M. Cunningham,

Sharon L.R. Kardia

Publication year - 2011

Publication title -

human heredity

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 0.423

H-Index - 62

eISSN - 1423-0062

pISSN - 0001-5652

DOI - 10.1159/000328843

Subject(s) - snp , computer science , single nucleotide polymorphism , algorithm , genotype , false discovery rate , sample size determination , quality score , software , data mining , statistics , mathematics , genetics , biology , engineering , gene , metric (unit) , operations management , programming language

Our goal was to evaluate the influence of quality control (QC) decisions using two genotype calling algorithms, CRLMM and Birdseed, designed for the Affymetrix SNP Array 6.0.

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