Bias in RNA-seq Library Preparation: Current Challenges and Solutions
Author(s) -
Huajuan Shi,
Ying Zhou,
Erteng Jia,
Min Pan,
Yunfei Bai,
Qinyu Ge
Publication year - 2021
Publication title -
biomed research international
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.772
H-Index - 126
eISSN - 2314-6141
pISSN - 2314-6133
DOI - 10.1155/2021/6647597
Subject(s) - rna seq , workflow , rna , computational biology , transcriptome , computer science , interpretation (philosophy) , biology , data science , genetics , gene , gene expression , database , programming language
Although RNA sequencing (RNA-seq) has become the most advanced technology for transcriptome analysis, it also confronts various challenges. As we all know, the workflow of RNA-seq is extremely complicated and it is easy to produce bias. This may damage the quality of RNA-seq dataset and lead to an incorrect interpretation for sequencing result. Thus, our detailed understanding of the source and nature of these biases is essential for the interpretation of RNA-seq data, finding methods to improve the quality of RNA-seq experimental, or development bioinformatics tools to compensate for these biases. Here, we discuss the sources of experimental bias in RNA-seq. And for each type of bias, we discussed the method for improvement, in order to provide some useful suggestions for researcher in RNA-seq experimental.
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