BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms | Zendy

Julien Allali | Zendy; Cédric Saule | Zendy; Cédric Chauve | Zendy; Yves d’Aubenton-Carafa | Zendy; Alain Denise | Zendy; Christine Drevet | Zendy; Pascal Ferraro | Zendy; Daniel Gautheret | Zendy; Claire Herrbach | Zendy; Fabrice Leclerc | Zendy; Antoine de Monte | Zendy; Aïda Ouangraoua | Zendy; Marie-France Sagot | Zendy; Michel Termier | Zendy; Claude Thermes | Zendy; Hélène Touzet | Zendy

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BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms

Author(s) -

Julien Allali,

Cédric Saule,

Cédric Chauve,

Yves d’Aubenton-Carafa,

Alain Denise,

Christine Drevet,

Pascal Ferraro,

Daniel Gautheret,

Claire Herrbach,

Fabrice Leclerc,

Antoine de Monte,

Aïda Ouangraoua,

Marie-France Sagot,

Michel Termier,

Claude Thermes,

Hélène Touzet

Publication year - 2012

Publication title -

advances in bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 0.33

H-Index - 20

eISSN - 1687-8035

pISSN - 1687-8027

DOI - 10.1155/2012/893048

Subject(s) - benchmarking , computer science , pairwise comparison , nucleic acid secondary structure , rna , software , data mining , genome , computational biology , information retrieval , theoretical computer science , artificial intelligence , biology , genetics , gene , marketing , business , programming language

The pairwise comparison of RNA secondary structures is a fundamental problem, with direct application in mining databases for annotating putative noncoding RNA candidates in newly sequenced genomes. An increasing number of software tools are available for comparing RNA secondary structures, based on different models (such as ordered trees or forests, arc annotated sequences, and multilevel trees) and computational principles (edit distance, alignment). We describe here the website BRASERO that offers tools for evaluating such software tools on real and synthetic datasets.

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