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Here, we present complete chromosome sequences of  Borrelia miyamotoi  samples CZ-F1E and CZ-F190E, which were obtained from  Ixodes ricinus  eggs from Czechia. The chromosome sequences, assembled from Illumina and Sanger sequencing data, had average coverage values of 647× and 3,216×, respectively. They belong to the European genotype, distinct from the Asian and American strains.

Complete Chromosomal Sequences of Two Borrelia miyamotoi Samples Obtained from Ixodes ricinus Eggs in Czechia