Characterization of Novel Transcripts of Human Papillomavirus Type 16 Using Cap Analysis Gene Expression Technology | Zendy

Ayumi Taguchi | Zendy; Kazunori Nagasaka | Zendy; Kei Kawana | Zendy; Kosuke Hashimoto | Zendy; Rika KusumotoMatsuo | Zendy; Charles Plessy | Zendy; Miranda Thomas | Zendy; Hiroe Nakamura | Zendy; Alessandro Bonetti | Zendy; Katsutoshi Oda | Zendy; Iwao Kukimoto | Zendy; Piero Carninci | Zendy; Lawrence Banks | Zendy; Yutaka Osuga | Zendy; Tomoyuki Fujii | Zendy

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Characterization of Novel Transcripts of Human Papillomavirus Type 16 Using Cap Analysis Gene Expression Technology

Author(s) -

Ayumi Taguchi,

Kazunori Nagasaka,

Kei Kawana,

Kosuke Hashimoto,

Rika KusumotoMatsuo,

Charles Plessy,

Miranda Thomas,

Hiroe Nakamura,

Alessandro Bonetti,

Katsutoshi Oda,

Iwao Kukimoto,

Piero Carninci,

Lawrence Banks,

Yutaka Osuga,

Tomoyuki Fujii

Publication year - 2014

Publication title -

journal of virology

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 2.617

H-Index - 292

eISSN - 1070-6321

pISSN - 0022-538X

DOI - 10.1128/jvi.03433-14

Subject(s) - biology , gene , transcriptome , gene expression , genetics , human papillomavirus , genome , transcription (linguistics) , papillomaviridae , gene expression profiling , computational biology , microbiology and biotechnology , virology , cervical cancer , medicine , linguistics , philosophy , cancer

We have performed cap-analysis gene expression (CAGE) sequencing to identify the regulatory networks that orchestrate genome-wide transcription in human papillomavirus type 16 (HPV16)-positive cervical cell lines of different grades: W12E, SiHa, and CaSki. Additionally, a cervical intraepithelial neoplasia grade 1 (CIN1) lesion was assessed for identifying the transcriptome expression profile. Here we have precisely identified a novel antisense noncoding viral transcript in HPV16. In conclusion, CAGE sequencing should pave the way for understanding a diversity of viral transcript expression.

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