Evaluation of Whole-Genome Sequencing for Identification and Typing of Vibrio cholerae | Zendy

David R. Greig | Zendy; Ulf Schaefer | Zendy; Sophie Octavia | Zendy; Ebony Hunter | Zendy; Marie Anne Chattaway | Zendy; Timothy J. Dallman | Zendy; Claire Jenkins | Zendy

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Evaluation of Whole-Genome Sequencing for Identification and Typing of Vibrio cholerae

Author(s) -

David R. Greig,

Ulf Schaefer,

Sophie Octavia,

Ebony Hunter,

Marie Anne Chattaway,

Timothy J. Dallman,

Claire Jenkins

Publication year - 2018

Publication title -

journal of clinical microbiology

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 2.349

H-Index - 255

eISSN - 1070-633X

pISSN - 0095-1137

DOI - 10.1128/jcm.00831-18

Subject(s) - vibrio cholerae , el tor , serotype , typing , biology , cholera , whole genome sequencing , genome , identification (biology) , molecular epidemiology , microbiology and biotechnology , genetics , genotype , bacteria , gene , ecology

Epidemiological and microbiological data onVibrio cholerae strains isolated between April 2004 and March 2018 (n = 836) and held at the Public Health England culture archive were reviewed. The traditional biochemical species identification and serological typing results were compared with the genome-derived species identification and serotype for a subset of isolates (n = 152).

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