Shifting the limits in wheat research and breeding using a fully annotated reference genome | Zendy

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Shifting the limits in wheat research and breeding using a fully annotated reference genome

Author(s) -

R. Appels,

Kellye Eversole,

Nils Stein,

Catherine Feuillet,

Beat Keller,

Jane Rogers,

Curtis Pozniak,

Frédéric Choulet,

Assaf Distelfeld,

Jesse Poland,

Gil Ronen,

Andrew Sharpe,

Omer Barad,

Kobi Baruch,

Gabriel KeebleGagnère,

Martin Mascher,

Gil Ben-Zvi,

Ambre-Aurore Josselin,

Axel Himmelbach,

François Balfourier,

Juan J. Gutiérrez-González,

Matthew Hayden,

ChuShin Koh,

Gary J. Muehlbauer,

Raj Pasam,

Etienne Paux,

Philippe Rigault,

Josquin Tibbits,

Vijay Tiwari,

M. Spannagl,

Daniel Lang,

Heidrun Gundlach,

Georg Haberer,

Klaus Mayer,

Danara Ormanbekova,

Verena M. Prade,

Hana Šimková,

Thomas Wicker,

David Swarbreck,

Hélène Rimbert,

Marius Felder,

Nicolas Guilhot,

Gemy Kaithakottil,

Jens Keilwagen,

Philippe Leroy,

Thomas Lux,

Sven Twardziok,

Luca Venturini,

Angéla Juhász,

Michaël Abrouk,

Iris Fischer,

Cristóbal Uauy,

Philippa Borrill,

Ricardo H. Ramírez-González,

Dominique Arnaud,

Smahane Chalabi,

Boulos Chalhoub,

Aron T. Cory,

Raju Datla,

Mark W. Davey,

John Jacobs,

Stephen J. Robinson,

Burkhard Steuernagel,

Fred van Ex,

Brande B. H. Wulff,

Moussa Benhamed,

Abdelhafid Bendahmane,

Lorenzo Concia,

David Latrasse,

Jan Bartoš,

Arnaud Bellec,

Hélène Bergès,

Jaroslav Doležel,

Zeev Frenkel,

Bikram Gill,

Abraham B. Korol,

Thomas Letellier,

Odd-Arne Olsen,

Kuldeep Singh,

Miroslav Valárik,

Edwin van der Vossen,

Sonia S. Vautrin,

Song Weining,

Tzion Fahima,

Vladimir Glikson,

Dina Raats,

Jarmila Číhalíková,

Helena Toegelová,

Jan Vrána,

Pierre Sourdille,

Benoît Darrier,

Delfina Barabaschi,

Luigi Cattivelli,

Pilar Hernández,

Sergio Gálvez,

Hikmet Budak,

Jonathan D. G. Jones,

Kamil Witek,

Guotai Yu,

Ian Small,

Joanna Melonek,

Ruonan Zhou,

Tatiana Belova,

K. Kanyuka,

Robert C. King,

Kirby T. Nilsen,

Sean Walkowiak,

Richard D. Cuthbert,

R. E. Knox,

Krysta Wiebe,

Daoquan Xiang,

Antje Rohde,

T. J. Golds,

Jana Čížková,

Bala Anı Akpınar,

Sezgi Biyiklioglu,

Liangliang Gao,

Amidou N’Daiye,

Marie Kubaláková,

Jan Šafář,

Françoise Alfama,

AnneFrançoise AdamBlondon,

Raphaël Flores,

Claire Guerche,

Mikaël Loaec,

Hadi Quesneville,

Janet Condie,

Jennifer Ens,

Ron MacLachlan,

Yifang Tan,

Adriana Alberti,

JeanMarc Aury,

Valérie Barbe,

Arnaud Couloux,

Corinne Cruaud,

Karine Labadie,

Sophie Mangenot,

Patrick Wincker,

Gaganpreet Kaur,

MingCheng Luo,

Sunish K. Sehgal,

Parveen Chhuneja,

O. P. Gupta,

Suruchi Jindal,

Parampreet Kaur,

Palvi Malik,

Priti Sharma,

Bharat Yadav,

Nisha Singh,

Jitendra P. Khurana,

Chanderkant Chaudhary,

Paramjit Khurana,

Vinod Kumar,

Ajay Kumar Mahato,

Saloni Mathur,

Amitha Mithra Sevanthi,

Naveen Sharma,

R. S. Tomar,

Kateřina Holušová,

Ondřej Plíhal,

Matthew D. Clark,

Darren Heavens,

George Kettleborough,

Jon Wright,

Barbora Balcárková,

Yuqin Hu,

Е. А. Салина,

Nikolai V. Ravin,

K. G. Skryabin,

Alexey V. Beletsky,

Vitaly V. Kadnikov,

Andrey V. Mardanov,

M. A. Nesterov,

Andrey L. Rakitin,

E. M. Sergeeva,

Hirokazu Handa,

Hiroyuki Kanamori,

Satoshi Katagiri,

Fuminori Kobayashi,

Shuhei Nasuda,

Tsuyoshi Tanaka,

Jian Wu,

Federica Cattonaro,

Min Jiumeng,

Karl Kugler,

Matthias Pfeifer,

Simen R. Sandve,

Xun Xu,

Bujie Zhan,

Jacqueline Batley,

Philipp E. Bayer,

David Edwards,

Satomi Hayashi,

Zuzana Tulpová,

Paul Visendi,

Licao Cui,

Xianghong Du,

Kewei Feng,

Xiaojun Nie,

Wei Tong,

Le Wang

Publication year - 2018

Publication title -

science

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 12.556

H-Index - 1186

eISSN - 1095-9203

pISSN - 0036-8075

DOI - 10.1126/science.aar7191

Subject(s) - genome , biology , reference genome , computational biology , gene , genetics , microbiology and biotechnology

An annotated reference sequence representing the hexaploid bread wheat genome in 21 pseudomolecules has been analyzed to identify the distribution and genomic context of coding and noncoding elements across the A, B, and D subgenomes. With an estimated coverage of 94% of the genome and containing 107,891 high-confidence gene models, this assembly enabled the discovery of tissue- and developmental stage-related coexpression networks by providing a transcriptome atlas representing major stages of wheat development. Dynamics of complex gene families involved in environmental adaptation and end-use quality were revealed at subgenome resolution and contextualized to known agronomic single-gene or quantitative trait loci. This community resource establishes the foundation for accelerating wheat research and application through improved understanding of wheat biology and genomics-assisted breeding.

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