“Newton’s cradle” proton relay with amide–imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
Author(s) -
Akihiko Nakamura,
Takuya Ishida,
Katsuhiro Kusaka,
Taro Yamada,
Shinya Fushinobu,
Ichiro Tanaka,
Satoshi Kaneko,
Kazunori Ohta,
Hiroaki Tanaka,
Koji Inaka,
Yoshiki Higuchi,
Nobuo Niimura,
Masahiro Samejima,
Kiyohiko Igarashi
Publication year - 2015
Publication title -
science advances
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 5.928
H-Index - 146
ISSN - 2375-2548
DOI - 10.1126/sciadv.1500263
Subject(s) - cellulase , tautomer , hydrogen bond , chemistry , phanerochaete , peptide bond , asparagine , amide , stereochemistry , hydrolysis , organic chemistry , enzyme , molecule
Hydrolysis of carbohydrates is a major bioreaction in nature, catalyzed by glycoside hydrolases (GHs). We used neutron diffraction and high-resolution x-ray diffraction analyses to investigate the hydrogen bond network in inverting cellulase PcCel45A, which is an endoglucanase belonging to subfamily C of GH family 45, isolated from the basidiomycete Phanerochaete chrysosporium. Examination of the enzyme and enzyme-ligand structures indicates a key role of multiple tautomerizations of asparagine residues and peptide bonds, which are finally connected to the other catalytic residue via typical side-chain hydrogen bonds, in forming the “Newton’s cradle”–like proton relay pathway of the catalytic cycle. Amide–imidic acid tautomerization of asparagine has not been taken into account in recent molecular dynamics simulations of not only cellulases but also general enzyme catalysis, and it may be necessary to reconsider our interpretation of many enzymatic reactions.
Accelerating Research
Robert Robinson Avenue,
Oxford Science Park, Oxford
OX4 4GP, United Kingdom
Address
John Eccles HouseRobert Robinson Avenue,
Oxford Science Park, Oxford
OX4 4GP, United Kingdom