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Comparative genomic and physiological analysis provides insights into the role of A cidobacteria in organic carbon utilization in A rctic tundra soils
Author(s) -
Rawat Suman R.,
Männistö Minna K.,
Bromberg Yana,
Häggblom Max M.
Publication year - 2012
Publication title -
fems microbiology ecology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.377
H-Index - 155
eISSN - 1574-6941
pISSN - 0168-6496
DOI - 10.1111/j.1574-6941.2012.01381.x
Subject(s) - acidobacteria , biology , tundra , genome , verrucomicrobia , gene , genetics , evolutionary biology , ecology , ecosystem , actinobacteria , 16s ribosomal rna
A cidobacteria are among the most abundant bacterial phyla found in terrestrial ecosystems, but relatively little is known about their diversity, distribution and most critically, their function. Understanding the functional activities encoded in their genomes will provide insights into their ecological roles. Here we describe the genomes of three novel cold‐adapted strains of subdivision 1 A cidobacteria . The genomes consist of a circular chromosome of 6.2 Mbp for G ranulicella mallensis MP 5 ACTX 8, 4.3 Mbp for G ranulicella tundricola MP 5 ACTX 9, and 5.0 Mbp for T erriglobus saanensis SP 1 PR 4. In addition, G . tundricola has five mega plasmids for a total genome size of 5.5 Mbp. The three genomes showed an abundance of genes assigned to metabolism and transport of carbohydrates. In comparison to three mesophilic A cidobacteria , namely A cidobacterium capsulatum ATCC 51196, ‘ C andidatus K oribacter versatilis’ E llin345, and ‘ C andidatus S olibacter usitatus’ E llin6076, the genomes of the three tundra soil strains contained an abundance of conserved genes/gene clusters encoding for modules of the carbohydrate‐active enzyme ( CAZ yme) family. Furthermore, a large number of glycoside hydrolases and glycosyl transferases were prevalent. We infer that gene content and biochemical mechanisms encoded in the genomes of three Arctic tundra soil A cidobacteria strains are shaped to allow for breakdown, utilization, and biosynthesis of diverse structural and storage polysaccharides and resilience to fluctuating temperatures and nutrient‐deficient conditions in Arctic tundra soils.

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