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REdiii : a pipeline for automated structure solution
Author(s) -
Bohn MarkusFrederik,
Schiffer Celia A.
Publication year - 2015
Publication title -
acta crystallographica section d
Language(s) - English
Resource type - Journals
ISSN - 1399-0047
DOI - 10.1107/s139900471500303x
Subject(s) - workflow , pipeline (software) , software , computer science , throughput , frame (networking) , process (computing) , tracing , computational science , real time computing , distributed computing , database , operating system , telecommunications , wireless
High‐throughput crystallographic approaches require integrated software solutions to minimize the need for manual effort. REdiii is a system that allows fully automated crystallographic structure solution by integrating existing crystallographic software into an adaptive and partly autonomous workflow engine. The program can be initiated after collecting the first frame of diffraction data and is able to perform processing, molecular‐replacement phasing, chain tracing, ligand fitting and refinement without further user intervention. Preset values for each software component allow efficient progress with high‐quality data and known parameters. The adaptive workflow engine can determine whether some parameters require modifications and choose alternative software strategies in case the preconfigured solution is inadequate. This integrated pipeline is targeted at providing a comprehensive and efficient approach to screening for ligand‐bound co‐crystal structures while minimizing repetitiveness and allowing a high‐throughput scientific discovery process.

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