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Structure of Bacillus subtilis γ‐glutamyltranspeptidase in complex with acivicin: diversity of the binding mode of a classical and electrophilic active‐site‐directed glutamate analogue
Author(s) -
Ida Tomoyo,
Suzuki Hideyuki,
Fukuyama Keiichi,
Hiratake Jun,
Wada Kei
Publication year - 2014
Publication title -
acta crystallographica section d
Language(s) - English
Resource type - Journals
ISSN - 1399-0047
DOI - 10.1107/s1399004713031222
Subject(s) - bacillus subtilis , binding site , chemistry , stereochemistry , active site , enzyme , escherichia coli , biochemistry , biology , bacteria , genetics , gene
γ‐Glutamyltranspeptidase (GGT) is an enzyme that plays a central role in glutathione metabolism, and acivicin is a classical inhibitor of GGT. Here, the structure of acivicin bound to Bacillus subtilis GGT determined by X‐ray crystallography to 1.8 Å resolution is presented, in which it binds to the active site in a similar manner to that in Helicobacter pylori GGT, but in a different binding mode to that in Escherichia coli GGT. In B. subtilis GGT, acivicin is bound covalently through its C3 atom with sp 2 hybridization to Thr403 O γ , the catalytic nucleophile of the enzyme. The results show that acivicin‐binding sites are common, but the binding manners and orientations of its five‐membered dihydroisoxazole ring are diverse in the binding pockets of GGTs.

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