
Averaged kick maps: less noise, more signal…and probably less bias
Author(s) -
Pražnikar Jure,
Afonine Pavel V.,
Gunčar Gregor,
Adams Paul D.,
Turk Dušan
Publication year - 2009
Publication title -
acta crystallographica section d
Language(s) - English
Resource type - Journals
ISSN - 1399-0047
DOI - 10.1107/s0907444909021933
Subject(s) - sigma , interpretation (philosophy) , maximum likelihood , mathematics , simulated annealing , algorithm , series (stratigraphy) , statistical physics , statistics , computer science , physics , geology , paleontology , programming language , quantum mechanics
Use of reliable density maps is crucial for rapid and successful crystal structure determination. Here, the averaged kick (AK) map approach is investigated, its application is generalized and it is compared with other map‐calculation methods. AK maps are the sum of a series of kick maps, where each kick map is calculated from atomic coordinates modified by random shifts. As such, they are a numerical analogue of maximum‐likelihood maps. AK maps can be unweighted or maximum‐likelihood (σ A ) weighted. Analysis shows that they are comparable and correspond better to the final model than σ A and simulated‐annealing maps. The AK maps were challenged by a difficult structure‐validation case, in which they were able to clarify the problematic region in the density without the need for model rebuilding. The conclusion is that AK maps can be useful throughout the entire progress of crystal structure determination, offering the possibility of improved map interpretation.
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