
Hydrogen‐bonding patterns in trimethoprim picolinate and 2‐amino‐4,6‐dimethylpyrimidinium picolinate hemihydrate
Author(s) -
Hemamalini Madhukar,
Muthiah Packianathan Thomas,
Lynch Daniel E.
Publication year - 2006
Publication title -
acta crystallographica section c
Language(s) - English
Resource type - Journals
eISSN - 1600-5759
pISSN - 0108-2701
DOI - 10.1107/s0108270105037856
Subject(s) - hydrogen bond , chemistry , trimethoprim , hemihydrate , inorganic chemistry , materials science , biochemistry , metallurgy , organic chemistry , molecule , gypsum , antibiotics
In the title compounds, namely 2,4‐diamino‐5‐[(3,4,5‐trimethoxyphenyl)methyl]pyrimidin‐1‐ium pyridine‐2‐carboxylate, C 14 H 19 N 4 O 3 + ·C 6 H 4 NO 2 − , (I), and 2‐amino‐4,6‐dimethylpyrimidin‐1‐ium pyridine‐2‐carboxylate hemihydrate, C 6 H 10 N 3 + ·C 6 H 4 NO 2 − ·0.5H 2 O, (II), the trimethoprim and 2‐amino‐4,6‐dimethylpyrimidin‐1‐ium cations are protonated at one of the pyrimidine N atoms. In (I), bifurcated hydrogen bonds are observed between a picolinate O atom, the protonated N atom and the 2‐amino group; the graph‐set designator is R 2 1 (6). The pyrimidine moieties of the trimethoprim cations are centrosymmetrically paired through a pair of N—H⋯N hydrogen bonds. In addition to the base pairing, one of the picolinate O atoms bridges the 2‐ and 4‐amino groups on either side of the paired bases, resulting in a complementary DADA array. In (II), the carboxylate group of the picolinate anion binds with the protonated pyrimidine N atom and the 2‐amino group of the pyrimidine moiety through a pair of N—H⋯O hydrogen bonds, leading to the common ring motif R 2 2 (8). The water molecule, which resides on a twofold rotation axis, bridges the carboxylate group of the picolinate anion via O—H⋯O hydrogen bonds.