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Transcription Factories and Nuclear Organization of the Genome
Author(s) -
Christopher H. Eskiw,
Nathan F. Cope,
Ieuan Clay,
Stefan Schoenfelder,
Takashi Nagano,
Peter Fraser
Publication year - 2010
Publication title -
cold spring harbor symposia on quantitative biology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.615
H-Index - 77
eISSN - 1943-4456
pISSN - 0091-7451
DOI - 10.1101/sqb.2010.75.046
Subject(s) - transcription factories , transcription (linguistics) , gene , biology , rna polymerase ii , nucleolus , genome , genetics , genomic organization , rna polymerase , rna , gene expression , promoter , microbiology and biotechnology , nucleus , linguistics , philosophy
The dynamic compartmental organization of the transcriptional machinery in mammalian nuclei places particular constraints on the spatial organization of the genome. The clustering of active RNA polymerase I transcription units from several chromosomes at nucleoli is probably the best-characterized and universally accepted example. RNA polymerase II localization in mammalian nuclei occurs in distinct concentrated foci that are several-fold fewer in number compared to the number of active genes and transcription units. Individual transcribed genes cluster at these shared transcription factories in a nonrandom manner, preferentially associating with heterologous, coregulated genes. We suggest that the three-dimensional (3D) conformation and relative arrangement of chromosomes in the nucleus has a major role in delivering tissue-specific gene-expression programs.

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