Kaustia mangrovi gen. nov., sp. nov. isolated from Red Sea mangrove sediments belongs to the recently proposed Parvibaculaceae family within the order Rhizobiales
Author(s) -
Fatmah O. Sefrji,
Ramona Marasco,
Grégoire Michoud,
Kholoud A. Seferji,
Giuseppe Merlino,
Daniele Daffonchio
Publication year - 2021
Publication title -
international journal of systematic and evolutionary microbiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.925
H-Index - 173
eISSN - 1466-5034
pISSN - 1466-5026
DOI - 10.1099/ijsem.0.004806
Subject(s) - biology , 16s ribosomal rna , phylogenetic tree , alphaproteobacteria , mangrove , halophile , phylogenetics , botany , lineage (genetic) , microbiology and biotechnology , gene , genetics , bacteria , ecology
We isolated a novel strain, R1DC25 T , described as Kaustia mangrovi gen. nov. sp. nov. from the sediments of a mangrove forest on the coast of the Red Sea in Saudi Arabia. This isolate is a moderately halophilic, aerobic/facultatively anaerobic Gram-stain-negative bacterium showing optimum growth at between 30 and 40 °C, at a pH of 8.5 and with 3-5 % NaCl. The genome of R1DC25 T comprises a circular chromosome that is 4 630 536 bp in length, with a DNA G+C content of 67.3 mol%. Phylogenetic analyses based on the 16S rRNA gene sequence and whole-genome multilocus sequence analysis of 120 concatenated single-copy genes revealed that R1DC25 T represents a distinct lineage within the family Parvibaculaceae in the order Rhizobiales within the class Alphaproteobacteria . R1DC25 T showing 95.8, 95.3 and 94.5 % 16S rRNA gene sequence identity with Rhodoligotrophos appendicifer , Rhodoligotrophos jinshengii and Rhodoligotrophos defluvii , respectively. The predominant quinone was Q-10, and the polar lipids were phosphatidylglycerol, phosphatidylcholine, diphosphatidylglycerol, as well as several distinct aminolipids and lipids. The predominant cellular fatty acids were C 19 : 0 cyclo ω 8 c , a combination of C 18 : 1 ω 7 c and/or C 18 : 1 ω 6 c and C 16 : 0 . On the basis of the differences in the phenotypic, physiological and biochemical characteristics from its known relatives and the results of our phylogenetic analyses, R1DC25 T (=KCTC 72348 T ;=JCM 33619 T ;=NCCB 100699 T ) is proposed to represent a novel species in a novel genus, and we propose the name Kaustia mangrovi gen. nov., sp. nov. ( Kaustia, subjective name derived from the abbreviation KAUST for King Abdullah University of Science and Technology; mangrovi , of a mangrove).
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