Halomonas saliphila sp. nov., a moderately halophilic bacterium isolated from a saline soil
Author(s) -
Longzhan Gan,
Xiufeng Long,
Heming Zhang,
Yanyan Hou,
Jiewei Tian,
YuQin Zhang,
Yongqiang Tian
Publication year - 2018
Publication title -
international journal of systematic and evolutionary microbiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.925
H-Index - 173
eISSN - 1466-5034
pISSN - 1466-5026
DOI - 10.1099/ijsem.0.002644
Subject(s) - biology , 16s ribosomal rna , halomonas , halophile , microbiology and biotechnology , phylogenetic tree , bacteria , strain (injury) , botany , genomic dna , sequence analysis , ribosomal rna , gene , genetics , anatomy
A novel, Gram-stain-negative, aerobic, rod-shaped, motile and moderately halophilic bacterium, designated strain LCB169 T , was isolated from a saline soil sample from Gansu Province, PR China. The cells of LCB169 T grew at 10-52 °C (optimum 30 °C), at pH 6.0-10.0 (optimum pH 8.0) and in the presence of 0-17 % (w/v) NaCl (optimum 10-15 %). Phylogenetic analysis based on 16S rRNA gene sequences and concatenated 16S rRNA, gyrB and rpoD genes sequences revealed that LCB169 T represented a member of the genus Halomonas in the class Gammaproteobacteria. The most closely related species were Halomonas daqingensis DQD2-30 T (98.0 % 16S rRNA gene sequence similarity), Halomonas kenyensis AIR-2 T (97.8 %) and Halomonas desiderata FB2 T (97.5 %). DNA-DNA relatedness values between LCB169 T and H. daqingensis CGMCC 1.6443 T , H. desiderata DSM 9502 T and H. kenyensis DSM 17331 T were 33, 35 and 38 %, respectively. The polar lipids were identified as diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine and three unidentified phospholipids. The major fatty acids were C18 : 1ω7c, C16 : 0, C16 : 1ω7c and C12 : 0 3-OH. The genomic DNA G+C content was 66.1 mol% and the predominant respiratory quinone was Q-9. On the basis of the results of phenotypic, phylogenetic and chemotaxonomic analyses and DNA-DNA hybridization relatedness values, LCB169 T is considered to represent a novel species of the genus Halomonas, for which the name Halomonas saliphila sp. nov. is proposed. The type strain is LCB169 T (=CGMCC 1.15818 T =KCTC 52618 T ).
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