Genome-based reclassification of Sphingopyxis ummariensis as a later heterotypic synonym of Sphingopyxis terrae, with the descriptions of Sphingopyxis terrae subsp. terrae subsp. nov. and Sphingopyxis terrae subsp. ummariensis subsp. nov.
Author(s) -
Guang-Da Feng,
Dongdong Wang,
Song-Zhen Yang,
Huaping Li,
Honghui Zhu
Publication year - 2017
Publication title -
international journal of systematic and evolutionary microbiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.925
H-Index - 173
eISSN - 1466-5034
pISSN - 1466-5026
DOI - 10.1099/ijsem.0.002465
Subject(s) - biology , 16s ribosomal rna , subspecies , phylogenetic tree , synonym (taxonomy) , genome , strain (injury) , gene , microbiology and biotechnology , genetics , genus , botany , zoology , anatomy
During the phylogenetic analysis of the genus Sphingopyxis, we found that an incorrect 16S rRNA gene sequence (accession number: D13727) was provided in the original description of Sphingopyxisterrae NBRC 15098 T and the wrong sequence has been adopted and used for a long time. It should be replaced by the new correct 16S rRNA gene sequence (accession number: MF618306). The new sequence shared the highest similarity (99.8 %) with that of Sphingopyxisummariensis DSM 24316 T . The average nucleotide identity (ANI) (96.87 %) and digital DNA-DNA hybridization (75.30 %) values based on the whole-genome sequences and almost the same phenotypic and chemotaxonomic characteristics of the two type strains revealed thatSphingopyxisummariensis should be a later heterotypic synonym ofSphingopyxisterrae. However, the distinctions in the genome size, hydrolysis of aesculin, α-glucosidase and particularly the fatty acid profiles strongly support that strain DSM 24316 T should be considered to represent a novel subspecies ofSphingopyxisterrae. Two novel subspecies are therefore proposed, namely Sphingopyxisterraesubsp. terrae subsp. nov. (type strain E-1-A T =NBRC 15098 T =JCM 10195 T =DSM 8831 T =LMG 17326 T ) and Sphingopyxisterraesubsp. ummariensis subsp. nov. (type strain UI2 T =DSM 24316 T =CCM 7428 T =MTCC 8591 T ).
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