Spirosoma koreense sp. nov., a species of the family Cytophagaceae isolated from beach soil
Author(s) -
Leonid N. Ten,
Joseph Okiria,
JaeJin Lee,
Seung–Yeol Lee,
InKyu Kang,
Dae Sung Lee,
HeeYoung Jung
Publication year - 2017
Publication title -
international journal of systematic and evolutionary microbiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.925
H-Index - 173
eISSN - 1466-5034
pISSN - 1466-5026
DOI - 10.1099/ijsem.0.002440
Subject(s) - biology , 16s ribosomal rna , phylogenetic tree , bacteroidetes , strain (injury) , genus , genomic dna , soil microbiology , botany , gene , bacteria , genetics , anatomy
A Gram-stain-negative, non-motile, non-spore-forming, rod-shaped, aerobic bacterium, designated 15J8-5 T , was isolated from beach soil on Jeju Island, Republic of Korea. The isolate grew at 10-37 °C (optimal 25 °C), pH 6-8 (optimal pH 7) and in the presence of 0-1 % (w/v) NaCl. The results of comparative 16S rRNA gene sequence analysis indicated that strain 15J8-5 T represented a member of the family Cytophagaceae, phylum Bacteroidetes and was most closely related to Spirosoma knui 15J8-12 T (93.1 % similarity), Spirosoma spitsbergense SPM-9 T (93.1 %) and Spirosoma endophyticum EX36 T (93.1 %). The G+C content of the genomic DNA of the novel strain was 48.0 mol%. The isolate contained menaquinone MK-7 as the predominant respiratory quinone, phosphatidylethanolamine as the major polar lipid, and summed feature 3 (C16 : 1ω7c/C16 : 1ω6c; 32.8 %), C16 : 1ω5c (24.8 %) and C16 : 0 (11.7 %) as the major fatty acids, which supported the affiliation of strain 15J8-5 T o the genus Spirosoma. The results of physiological and biochemical tests allowed genotypic and phenotypic differentiation of strain 15J8-5 T from members of the genus Spirosoma. Based on its phenotypic properties and phylogenetic distinctiveness, strain 15J8-5 T represents a novel species of the genus Spirosoma, for which the name Spirosomakoreense sp. nov. is proposed. The type strain is 15J8-5 T (=KCTC 52027 T =JCM 31992 T ).
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