Sphingobacterium tabacisoli sp. nov., isolated from a tobacco field soil sample
Author(s) -
Xing-Kui Zhou,
Qingqing Li,
MingHe Mo,
Yong-Guang Zhang,
Limin Dong,
Min Xiao,
WenJun Li,
Yan-Qing Duan
Publication year - 2017
Publication title -
international journal of systematic and evolutionary microbiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.925
H-Index - 173
eISSN - 1466-5034
pISSN - 1466-5026
DOI - 10.1099/ijsem.0.002381
Subject(s) - 16s ribosomal rna , biology , genomic dna , phylogenetic tree , strain (injury) , bacteria , microbiology and biotechnology , gene , genetics , anatomy
A Gram-staining-negative, non-motile and rod-shaped bacterium, designated strain h337 T , was isolated from an arable soil sample of a tobacco field in Kunming, south-west China. The cells showed oxidase-positive and catalase-positive reactions. Growth was observed at 10-35 °C, at pH 6.0-9.0 and in the presence of up to 3 % (w/v) NaCl, with optimal growth at 30 °C, pH 7.0 and with 1-2 % (w/v) NaCl. The predominant isoprenoid quinone was MK-7. The major fatty acids were identified as iso-C15 : 0, iso-C17 : 0 3-OH, summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c) and summed feature 4 (iso-C17 : 1 I and/or anteiso-C17 : 1 B). The cellular polar lipids contained phosphatidylethanolamine, sphingophospholipid, four unidentified phospholipids, five unidentified lipids and three unidentified aminophospholipids. The genomic DNA G+C content was 41.5 mol%. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain h337 T should be assigned to the genus Sphingobacterium. 16S rRNA gene sequence similarity analysis showed that strain h337 T was most closely related to 'Sphingobacteriumyamdrokense' 3-0-1 (98.8 %) and Sphingobacteriumyanglingense CCNWSP36-1 T (98.5 %) and shared less than 97 % similarity with other species of the genus Sphingobacterium. DNA-DNA hybridization data indicated that the isolate represented a novel genomic species belonging to the genus Sphingobacterium. The characteristics determined in this polyphasic taxonomic study indicated that strain h337 T represents a novel species of the genus Sphingobacterium, for which the name Sphingobacterium tabacisoli sp. nov. (type strain h337 T =KCTC 52298 T =CCTCC AB 2017155 T ) is proposed.
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