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Phenylobacterium panacis sp. nov., isolated from the rhizosphere of rusty mountain ginseng
Author(s) -
Mohamed El-Agamy Farh,
Yeon-Ju Kim,
Priyanka Singh,
Van-An Hoang,
DeokChun Yang
Publication year - 2016
Publication title -
international journal of systematic and evolutionary microbiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.925
H-Index - 173
eISSN - 1466-5034
pISSN - 1466-5026
DOI - 10.1099/ijsem.0.001109
Subject(s) - 16s ribosomal rna , biology , rhizosphere , strain (injury) , ginseng , botany , glycolipid , gene sequence , terpenoid , bacterial strain , microbiology and biotechnology , gene , bacteria , biochemistry , genetics , medicine , alternative medicine , anatomy , pathology
A novel, Gram-stain-negative, rod-shaped bacterial strain, designated as DCY109 T , was isolated from the rhizosphere of rusty mountain ginseng root located on Hwacheon mountain of Gangwon province, South Korea. 16S rRNA gene sequence analysis revealed that strain DCY109 T belonged to the genus Phenylobacterium and was related closely to Phenylobacterium muchangponense KACC 15042 T (98.2 % similarity), Phenylobacterium immobile DSM 1986 T (96.9 %) and Phenylobacterium koreense KCTC 12206 T (96.7 %). The predominant isoprenoid quinone was ubiquinone (Q-10) and the DNA G+C content was 66.9 mol%. The major polar lipids were phosphatidylglycerol, an unidentified glycolipid and an unidentified lipid. The major fatty acids (>10 %) were C16 : 0, summed feature 3 (which comprised C16 : 1ω7c and/or C16 : 1ω6c) and summed feature 8 (which comprised C18 : 1ω7c and/or C18 : 1ω6c). Mean DNA-DNA relatedness between strain DCY109 T and its closest relative, P. muchangponense KACC 15042 T , was 15.1±3.9 %. Based on the physiological, biochemical, chemotaxonomic and genetic analyses, strain DCY109 T is considered to represent a novel species of the genus Phenylobacterium, for which the name Phenylobacterium panacis sp. nov. is proposed. The type strain is DCY109 T (=KCTC 42749 T =JCM 31045 T ).

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