Hymenobacter paludis sp. nov., isolated from a marsh
Author(s) -
Wen-Ming Chen,
Zih-Han Chen,
ChiuChung Young,
ShihYi Sheu
Publication year - 2016
Publication title -
international journal of systematic and evolutionary microbiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.925
H-Index - 173
eISSN - 1466-5034
pISSN - 1466-5026
DOI - 10.1099/ijsem.0.000915
Subject(s) - biology , marsh , zoology , ecology , wetland
A bacterial strain, designated KBP-30 T , was isolated from a water sample taken from the Banping Lake Wetland Park in Taiwan and characterized taxonomically using a polyphasic approach. Cells of strain KBP-30 T were Gram-stain-negative, aerobic, motile by gliding rods that were covered by large capsules and formed red colonies. Growth occurred at 10-37 °C (optimum 20 °C), at pH 6-8 (optimum pH 6) and with 0-1 % NaCl (optimum 0 %). Phylogenetic analyses based on 16S rRNA gene sequences showed that strain KBP-30 T belonged to the genus Hymenobacter and was most closely related to Hymenobacter ocellatus Myx 2105 T with a sequence similarity of 97.7 %; 16S rRNA gene sequence similarities were less than 95.1 % with other members of the genus. Strain KBP-30 T contained iso-C 15 : 0 , summed feature 4 (iso-C 17 : 1 I and/or anteiso-C 17 : 1 B), anteiso-C 15 : 0 , iso-C 17 : 0 3-OH and summed feature 3 (C 16 : 1 ω7 c and/or C 16 : 1 ω6 c ) as the predominant fatty acids. The major isoprenoid quinone was MK-7. The polar lipid profile consisted of phosphatidylethanolamine, three unidentified aminophospholipids, an unidentified aminolipid, an unidentified glycolipid and eight unidentified lipids. The major polyamine was homospermidine. The DNA G+C content of the genomic DNA was 60.3 mol%. The DNA-DNA relatedness of strain KBP-30 T with respect to Hymenobacter ocellatus Myx 2105 T was less than 42 %. On the basis of the phylogenetic inference and phenotypic data, strain KBP-30 T represents a novel species of the genus Hymenobacter , for which the name Hymenobacter paludis sp. nov. is proposed. The type strain is KBP-30 T ( = LMG 27293 T = KCTC 32237 T ).
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