Pseudahrensia todarodis sp. nov., isolated from the gut of a Japanese flying squid, Todarodes pacificus
Author(s) -
Hyun Sik Kim,
Pil Soo Kim,
DongWook Hyun,
JuneYoung Lee,
Woorim Kang,
NaRi Shin,
Tae Woong Whon,
JinWoo Bae
Publication year - 2016
Publication title -
international journal of systematic and evolutionary microbiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.925
H-Index - 173
eISSN - 1466-5034
pISSN - 1466-5026
DOI - 10.1099/ijsem.0.000888
Subject(s) - biology , 16s ribosomal rna , strain (injury) , genomic dna , phylogenetic tree , bacteria , microbiology and biotechnology , gene , genetics , anatomy
A novel Gram-stain-negative, non-motile, non-spore-forming, non-flagellated, aerobic, beige-coloured and rod-shaped bacterium, designated strain KHS02 T , was isolated from the intestinal tract of a Japanese flying squid, Todarodes pacificus , which was collected from the East Sea, Korea. Phylogenetic analysis of 16S rRNA gene sequences revealed that strain KHS02 T formed a monophyletic clade with Pseudahrensia aquimaris HDW-32 T , with which it had the highest sequence similarity (98.67 %). Strain KHS02 T grew optimally at pH 7 with 2 % (w/v) NaCl at 25 °C on marine broth 2216, but could not grow without Na + . The predominant isoprenoid quinone was ubiquinone-10 (Q-10). The major fatty acids (>10 % of the total) were summed feature 8 (C 18 : 1 ω6 c and/or C 18 : 1 ω7 c ) and 11-methyl C 18 : 1 ω7 c . The polar lipids of strain KHS02 T comprised phosphatidylcholine, phosphatidylglycerol, phosphatidylethanolamine, two unidentified aminolipids, an unidentified phospholipid and an unidentified lipid. The genomic DNA G+C content was 58.6 mol%. DNA-DNA hybridization showed that the isolate shared 16.2 ± 1.3 % (reciprocal, 15.7 ± 2.8 %) genomic relatedness with the type strain of the closest species. In conclusion, this isolate is suggested to represent a novel species of the genus Pseudahrensia , for which the name Pseudahrensia todarodis is proposed. The type strain is KHS02 T ( = KACC 18257 T = JCM 30419 T ).
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