Pseudorhodobacter psychrotolerans sp. nov., a psychrotolerant bacterium isolated from terrestrial soil, and emended description of the genus Pseudorhodobacter
Author(s) -
Y. M. Lee,
Jiahao Yang,
Kyunghwa Baek,
Se Jong Han,
SangChul Shin,
Chung Yeon Hwang,
Soon Gyu Hong,
H. K. Lee
Publication year - 2015
Publication title -
international journal of systematic and evolutionary microbiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.925
H-Index - 173
eISSN - 1466-5034
pISSN - 1466-5026
DOI - 10.1099/ijsem.0.000841
Subject(s) - biology , 16s ribosomal rna , phylogenetic tree , strain (injury) , phosphatidylglycerol , botany , bacteria , genomic dna , ribosomal rna , genus , microbiology and biotechnology , gene , phospholipid , genetics , phosphatidylcholine , anatomy , membrane
A Gram-stain-negative, facultatively aerobic, cream-coloured, ovoid-shaped, non-motile and psychrotolerant bacterial strain, PAMC 27389 T , was isolated from terrestrial soil collected on King George Island, Antarctica. Phylogenetic analysis based on the 16S rRNA gene sequence revealed that strain PAMC 27389 T belongs to the genus Pseudorhodobacter , sharing highest similarities with the type strains of Pseudorhodobacter wandonensis (96.9 %), Pseudorhodobacter antarcticus (96.8 %), Pseudorhodobacter ferrugineus (96.5 %) and Pseudorhodobacter aquimaris (95.4 %). Average nucleotide identity values between strain PAMC 27389 T and the type strains of P. wandonensis , P. antarcticus , P. ferrugineus and P. aquimaris were 70.8, 70.9, 71.0 and 70.5 %, respectively and the genome-to-genome distances were 18.4-19.1 %, indicating PAMC 27389 T is clearly distinguished from the most closely related Pseudorhodobacter species. The genomic DNA G+C content was 60.1 mol%. Strain PAMC 27389 T grew at 0-37 °C (optimally at 15-20 °C), at pH 5.5-9.0 (optimally at pH 6.5-7.0) and in the presence of 0.5-3.0 % (w/v) sea salt (optimally with 0.5 %). It lacked bacteriochlorophyll a . The major fatty acids (>5 %) were summed feature 8 (C 18 : 1 ω7 c and/or C 18 : 1 ω6 c ) and C 18 : 1 ω7 c 11-methyl. The major polar lipids were phosphatidylcholine, phosphatidylglycerol, an unidentified phospholipid, an unidentified aminolipid, an unidentified lipid and three unidentified aminophospholipids. The major respiratory quinone was Q-10. Based on the phenotypic, chemotaxonomic and genomic data presented, we propose the name Pseudorhodobacter psychrotolerans sp. nov. with the type strain PAMC 27389 T ( = KCTC 42640 T = JCM 30764 T ).
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