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Simultaneous parameter estimation and variable selection via the logit-normal continuous analogue of the spike-and-slab prior
Author(s) -
William Thomson,
Sara Jabbari,
Angela E. Taylor,
Wiebke Arlt,
David J. Smith
Publication year - 2019
Publication title -
journal of the royal society interface
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.655
H-Index - 139
eISSN - 1742-5689
pISSN - 1742-5662
DOI - 10.1098/rsif.2018.0572
Subject(s) - feature selection , spike (software development) , computer science , generalizability theory , logit , selection (genetic algorithm) , bayesian probability , artificial intelligence , variable (mathematics) , machine learning , prior probability , statistics , econometrics , pattern recognition (psychology) , data mining , mathematics , mathematical analysis , software engineering
We introduce a Bayesian prior distribution, the logit-normal continuous analogue of the spike-and-slab, which enables flexible parameter estimation and variable/model selection in a variety of settings. We demonstrate its use and efficacy in three case studies—a simulation study and two studies on real biological data from the fields of metabolomics and genomics. The prior allows the use of classical statistical models, which are easily interpretable and well known to applied scientists, but performs comparably to common machine learning methods in terms of generalizability to previously unseen data.

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