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Degradation rate uniformity determines success of oscillations in repressive feedback regulatory networks
Author(s) -
Karen M. Page,
Rubén PerezCarrasco
Publication year - 2018
Publication title -
journal of the royal society interface
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.655
H-Index - 139
eISSN - 1742-5689
pISSN - 1742-5662
DOI - 10.1098/rsif.2018.0157
Subject(s) - degradation (telecommunications) , control theory (sociology) , ring (chemistry) , biological system , nonlinear system , function (biology) , stability (learning theory) , positive feedback , gene regulatory network , range (aeronautics) , computer science , negative feedback , yield (engineering) , statistical physics , mathematics , topology (electrical circuits) , physics , biology , chemistry , materials science , gene , engineering , artificial intelligence , microbiology and biotechnology , thermodynamics , voltage , gene expression , composite material , telecommunications , biochemistry , control (management) , quantum mechanics , machine learning , organic chemistry , combinatorics , electrical engineering
Ring oscillators are biochemical circuits consisting of a ring of interactions capable of sustained oscillations. The nonlinear interactions between genes hinder the analytical insight into their function, usually requiring computational exploration. Here, we show that, despite the apparent complexity, the stability of the unique steady state in an incoherent feedback ring depends only on the degradation rates and a single parameter summarizing the feedback of the circuit. Concretely, we show that the range of regulatory parameters that yield oscillatory behaviour is maximized when the degradation rates are equal. Strikingly, this result holds independently of the regulatory functions used or number of genes. We also derive properties of the oscillations as a function of the degradation rates and number of nodes forming the ring. Finally, we explore the role of mRNA dynamics by applying the generic results to the specific case with two naturally different degradation timescales.

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