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Biogeographic calibrations for the molecular clock
Author(s) -
Simon Y. W. Ho,
Kai Tong,
Charles S. P. Foster,
Andrew M. Ritchie,
Nathan Lo,
Michael D. Crisp
Publication year - 2015
Publication title -
biology letters
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.596
H-Index - 110
eISSN - 1744-957X
pISSN - 1744-9561
DOI - 10.1098/rsbl.2015.0194
Subject(s) - molecular clock , range (aeronautics) , biology , calibration , variation (astronomy) , ecology , statistics , phylogenetics , materials science , mathematics , physics , gene , astrophysics , composite material , biochemistry
Molecular estimates of evolutionary timescales have an important role in a range of biological studies. Such estimates can be made using methods based on molecular clocks, including models that are able to account for rate variation across lineages. All clock models share a dependence on calibrations, which enable estimates to be given in absolute time units. There are many available methods for incorporating fossil calibrations, but geological and climatic data can also provide useful calibrations for molecular clocks. However, a number of strong assumptions need to be made when using these biogeographic calibrations, leading to wide variation in their reliability and precision. In this review, we describe the nature of biogeographic calibrations and the assumptions that they involve. We present an overview of the different geological and climatic events that can provide informative calibrations, and explain how such temporal information can be incorporated into dating analyses.

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