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Polymorphism of genetic ambigrams
Author(s) -
Gytis Dudas,
Greg Huber,
Michael Wilkinson,
David Yllanes
Publication year - 2021
Publication title -
virus evolution
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 2.231
H-Index - 23
ISSN - 2057-1577
DOI - 10.1093/ve/veab038
Subject(s) - open reading frame , biology , genetics , genome , computational biology , virology , gene , peptide sequence
Double synonyms in the genetic code can be used as a tool to test competing hypotheses regarding ambigrammatic narnavirus genomes. Applying the analysis to recent observations of Culex narnavirus 1 and Zhejiang mosquito virus 3 ambigrammatic viruses indicates that the open reading frame on the complementary strand of the segment coding for RNA-dependent RNA polymerase does not code for a functional protein. Culex narnavirus 1 has been shown to possess a second segment, also ambigrammatic, termed ‘Robin’. We find a comparable segment for Zhejiang mosquito virus 3 , a moderately diverged relative of Culex narnavirus 1 . Our analysis of Robin polymorphisms suggests that its reverse open reading frame also does not code for a functional protein. We make a hypothesis about its role.

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