Statistical Issues Arising in the Analysis of DNA–DNA Hybridization Data

ARCHIE, J. W. 1989. A randomization test for phylogenetic information in systematic data. Syst. Zool. 38:239-252. BALLARD, J. W. Q, G. J. OLSEN, D. P. FAITH, W. A. ODGERS, D. M. ROWELL, AND P. W. ATKINSON. 1992. Evidence from 12S ribosomal RNA sequences that onychophorans are modified arthropods. Science 258:1345-1348. FAITH, D. P. 1990. Chance marsupial relationships. Nature 345:393-394. FAITH, D. P. 1991. Cladistic permutation tests for monophyly and nonmonophyly. Syst. Zool. 40:366375. FAITH, D. P. 1992. On corroboration: A reply to Carpenter. Cladistics 8:265-273. FAITH, D. P., AND P. S. CRANSTON. 1991. Could a cladogram this short have arisen by chance alone?: On permutation tests for cladistic structure. Cladistics 7:1-28. FAITH, D. P., AND P. S. CRANSTON. 1992. Probability, parsimony, and Popper. Syst. Biol. 41:252-257. FAITH, D. P., AND J. W. Q BALLARD. 1994. Length differences and topology-dependent tests: A response to Kallersjo et al. Cladistics. 10:57-64. FELSENSTEIN, J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791. SWOFFORD, D. L. 1996. PAUP*: Phylogenetic analysis using parsimony (*and other methods), version 4.0. Sinauer, Sunderland, Massachusetts. SWOFFORD, D. L., J. L. THORNE, J. FELSENSTEIN, AND B. M. WIEGMANN. 1996. The topology-dependent permutation test for monophyly does not test for monophyly. Syst. Biol. 45:575-579.