Octaplex formation of d(GCGAAAGC) with the double A-quartet
Author(s) -
Kenta Mitomi,
Jiro Kondo,
Wataru Adachi,
S. Umeda,
Kazuhiro Fujita,
T. Sunami,
A. Takénaka
Publication year - 2005
Publication title -
nucleic acids symposium series
Language(s) - English
Resource type - Journals
eISSN - 1746-8272
pISSN - 0261-3166
DOI - 10.1093/nass/49.1.71
Subject(s) - block (permutation group theory) , crystallography , base (topology) , molecule , chemistry , sequence (biology) , mutant , stereochemistry , physics , combinatorics , mathematics , biochemistry , organic chemistry , mathematical analysis , gene
We reported that the sequence gcGA[X]1Agc adopts a specific structure to form several multiplexes. In the case of X=G, an octaplex formation occurs, in which the stacked double G-quartet stabilizes the architecture through potassium cation mediations. In the case of a mutant X=A, too, it has been found that the oligomers form an octaplex. The eight central A residues form a stacked double A-quartet, which is a first example of adenine associations. Several water molecules occupy the centre to stabilize the quartets, so that the octaplex seems to be swollen as compared with that of X=G. In any multiplex formations, the building block is a base-intercalated duplexes.
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