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Site-specific biotinylation of RNA molecules by transcription using unnatural base pairs
Author(s) -
K. Moriyama,
Michiko Kimoto,
Takeki Mitsui,
Shigeyuki Yokoyama,
Ichiro Hirao
Publication year - 2005
Publication title -
nucleic acids research
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 9.008
H-Index - 537
eISSN - 1362-4954
pISSN - 0305-1048
DOI - 10.1093/nar/gni128
Subject(s) - biotinylation , biology , rna , aptamer , transcription (linguistics) , base pair , dna , t7 rna polymerase , microbiology and biotechnology , biochemistry , computational biology , bacteriophage , gene , linguistics , philosophy , escherichia coli
Direct site-specific biotinylation of RNA molecules was achieved by specific transcription mediated by unnatural base pairs. Unnatural base pairs between 2-amino-6-(2-thienyl)purine (denoted by s) and 2-oxo(1H)pyridine (denoted by y), or 2-amino-6-(2-thiazolyl)purine (denoted as v) and y specifically function in T7 transcription. Using these unnatural base pairs, the substrate of biotinylated-y (Bio-yTP) was selectively incorporated into RNA, opposite s or v in the DNA templates, by T7 RNA polymerase. This method was applied to the immobilization of an RNA aptamer on sensor chips, and the aptamer accurately recognized its target protein. This direct site-specific biotinylation will provide a tool for RNA-based biotechnologies

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