UCSC Genome Browser enters 20th year
Author(s) -
Christopher M. Lee,
Galt P Barber,
Jonathan D. Casper,
Hiram Clawson,
Mark Diekhans,
Jairo Navarro Gonzalez,
Angie S. Hinrichs,
Brian T. Lee,
Luis R Nassar,
Conner C. Powell,
Brian J. Raney,
Kate R. Rosenbloom,
Daniel Schmelter,
Matthew L Speir,
Ann S. Zweig,
David Haussler,
Maximilian Haeussler,
Robert M. Kuhn,
W. James Kent
Publication year - 2019
Publication title -
nucleic acids research
Language(s) - Uncategorized
Resource type - Journals
SCImago Journal Rank - 9.008
H-Index - 537
eISSN - 1362-4954
pISSN - 0305-1048
DOI - 10.1093/nar/gkz1012
Subject(s) - genome browser , genome , biology , encode , genomics , computational biology , ensembl , annotation , genetics , world wide web , gene , computer science
The University of California Santa Cruz Genome Browser website (https://genome.ucsc.edu) enters its 20th year of providing high-quality genomics data visualization and genome annotations to the research community. In the past year, we have added a new option to our web BLAT tool that allows search against all genomes, a single-cell expression viewer (https://cells.ucsc.edu), a 'lollipop' plot display mode for high-density variation data, a RESTful API for data extraction and a custom-track backup feature. New datasets include Tabula Muris single-cell expression data, GeneHancer regulatory annotations, The Cancer Genome Atlas Pan-Cancer variants, Genome Reference Consortium Patch sequences, new ENCODE transcription factor binding site peaks and clusters, the Database of Genomic Variants Gold Standard Variants, Genomenon Mastermind variants and three new multi-species alignment tracks.
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