PopHumanScan: the online catalog of human genome adaptation
Author(s) -
Jesús Murga-Moreno,
Marta CoronadoZamora,
Alejandra Bodelón,
Antonio Barbadilla,
Sònia Casillas
Publication year - 2018
Publication title -
nucleic acids research
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 9.008
H-Index - 537
eISSN - 1362-4954
pISSN - 0305-1048
DOI - 10.1093/nar/gky959
Subject(s) - biology , adaptation (eye) , selection (genetic algorithm) , genome , population , human genetic variation , evolutionary biology , 1000 genomes project , human genome , computational biology , genetics , computer science , gene , artificial intelligence , demography , neuroscience , sociology , genotype , single nucleotide polymorphism
Since the migrations that led humans to colonize Earth, our species has faced frequent adaptive challenges that have left signatures in the landscape of genetic variation and that we can identify in our today's genomes. Here, we (i) perform an outlier approach on eight different population genetic statistics for 22 non-admixed human populations of the Phase III of the 1000 Genomes Project to detect selective sweeps at different historical ages, as well as events of recurrent positive selection in the human lineage; and (ii) create PopHumanScan, an online catalog that compiles and annotates all candidate regions under selection to facilitate their validation and thoroughly analysis. Well-known examples of human genetic adaptation published elsewhere are included in the catalog, as well as hundreds of other attractive candidates that will require further investigation. Designed as a collaborative database, PopHumanScan aims to become a central repository to share information, guide future studies and help advance our understanding of how selection has modeled our genomes as a response to changes in the environment or lifestyle of human populations. PopHumanScan is open and freely available at https://pophumanscan.uab.cat.
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