Patscanui: an intuitive web interface for searching patterns in DNA and protein data | Zendy

Kai Blin | Zendy; Wolfgang Wohlleben | Zendy; Tilmann Weber | Zendy

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Patscanui: an intuitive web interface for searching patterns in DNA and protein data

Author(s) -

Kai Blin,

Wolfgang Wohlleben,

Tilmann Weber

Publication year - 2018

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/gky321

Subject(s) - biology , interface (matter) , user interface , computational biology , computer science , bioinformatics , programming language , pulmonary surfactant , biochemistry , gibbs isotherm

Patterns in biological sequences frequently signify interesting features in the underlying molecule. Many tools exist to search for well-known patterns. Less support is available for exploratory analysis, where no well-defined patterns are known yet. PatScanUI (https://patscan.secondarymetabolites.org/) provides a highly interactive web interface to the powerful generic pattern search tool PatScan. The complex PatScan-patterns are created in a drag-and-drop aware interface allowing researchers to do rapid prototyping of the often complicated patterns useful to identifying features of interest.

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