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Open Targets Platform: new developments and updates two years on
Author(s) -
Denise CarvalhoSilva,
Andrea Pierleoni,
Miguel Pignatelli,
Chuang Kee Ong,
Luca Fumis,
Nikiforos Karamanis,
Miguel Carmona,
Adam Faulconbridge,
Andrew Hercules,
Elaine McAuley,
Alfredo Miranda,
Gareth Peat,
Michaela Spitzer,
Jeffrey C. Barrett,
David G. Hulcoop,
Eliseo Papa,
Gautier Koscielny,
Ian Dunham
Publication year - 2018
Publication title -
nucleic acids research
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 9.008
H-Index - 537
eISSN - 1362-4954
pISSN - 0305-1048
DOI - 10.1093/nar/gky1133
Subject(s) - identification (biology) , world wide web , usability , genomics , application programming interface , open data , computer science , download , biology , data science , genome , genetics , botany , human–computer interaction , gene , programming language
The Open Targets Platform integrates evidence from genetics, genomics, transcriptomics, drugs, animal models and scientific literature to score and rank target-disease associations for drug target identification. The associations are displayed in an intuitive user interface (https://www.targetvalidation.org), and are available through a REST-API (https://api.opentargets.io/v3/platform/docs/swagger-ui) and a bulk download (https://www.targetvalidation.org/downloads/data). In addition to target-disease associations, we also aggregate and display data at the target and disease levels to aid target prioritisation. Since our first publication two years ago, we have made eight releases, added new data sources for target-disease associations, started including causal genetic variants from non genome-wide targeted arrays, added new target and disease annotations, launched new visualisations and improved existing ones and released a new web tool for batch search of up to 200 targets. We have a new URL for the Open Targets Platform REST-API, new REST endpoints and also removed the need for authorisation for API fair use. Here, we present the latest developments of the Open Targets Platform, expanding the evidence and target-disease associations with new and improved data sources, refining data quality, enhancing website usability, and increasing our user base with our training workshops, user support, social media and bioinformatics forum engagement.

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