Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals | Zendy

Marina Lizio | Zendy; Jayson Harshbarger | Zendy; Imad Abugessaisa | Zendy; Shuei Noguchi | Zendy; Atsushi Kondo | Zendy; Jessica Severin | Zendy; Chris Mungall | Zendy; David J. Arenillas | Zendy; Anthony Mathelier | Zendy; Yulia A. Medvedeva | Zendy; Andreas Lennartsson | Zendy; Finn Drabløs | Zendy; Jordan A. Ramilowski | Zendy; Owen J. L. Rackham | Zendy; Julian Gough | Zendy; Robin Andersson | Zendy; Albin Sandelin | Zendy; Hans Ienasescu | Zendy; Hiromasa Ono | Zendy; Hidemasa Bono | Zendy; Yoshihide Hayashizaki | Zendy; Piero Carninci | Zendy; Alistair R. R. Forrest | Zendy; Takeya Kasukawa | Zendy; Hideya Kawaji | Zendy

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Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals

Author(s) -

Marina Lizio,

Jayson Harshbarger,

Imad Abugessaisa,

Shuei Noguchi,

Atsushi Kondo,

Jessica Severin,

Chris Mungall,

David J. Arenillas,

Anthony Mathelier,

Yulia A. Medvedeva,

Andreas Lennartsson,

Finn Drabløs,

Jordan A. Ramilowski,

Owen J. L. Rackham,

Julian Gough,

Robin Andersson,

Albin Sandelin,

Hans Ienasescu,

Hiromasa Ono,

Hidemasa Bono,

Yoshihide Hayashizaki,

Piero Carninci,

Alistair R. R. Forrest,

Takeya Kasukawa,

Hideya Kawaji

Publication year - 2016

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/gkw995

Subject(s) - annotation , resource (disambiguation) , biology , world wide web , web resource , computer science , genome , computational biology , data science , bioinformatics , genetics , gene , computer network

Upon the first publication of the fifth iteration of the Functional Annotation of Mammalian Genomes collaborative project, FANTOM5, we gathered a series of primary data and database systems into the FANTOM web resource (http://fantom.gsc.riken.jp) to facilitate researchers to explore transcriptional regulation and cellular states. In the course of the collaboration, primary data and analysis results have been expanded, and functionalities of the database systems enhanced. We believe that our data and web systems are invaluable resources, and we think the scientific community will benefit for this recent update to deepen their understanding of mammalian cellular organization. We introduce the contents of FANTOM5 here, report recent updates in the web resource and provide future perspectives.

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