The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community | Zendy

Thomas Darde | Zendy; Olivier Sallou | Zendy; E. Becker | Zendy; Bertrand Evrard | Zendy; Cyril Monjeaud | Zendy; Yvan Le Bras | Zendy; Bernard Jégou | Zendy; Olivier Collin | Zendy; Antoine D. Rolland | Zendy; Frédéric Chalmel | Zendy

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The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community

Author(s) -

Thomas Darde,

Olivier Sallou,

E. Becker,

Bertrand Evrard,

Cyril Monjeaud,

Yvan Le Bras,

Bernard Jégou,

Olivier Collin,

Antoine D. Rolland,

Frédéric Chalmel

Publication year - 2015

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/gkv345

Subject(s) - biology , upload , toolbox , visualization , modular design , data visualization , data science , ecology , computational biology , world wide web , data mining , computer science , programming language

We report the development of the ReproGenomics Viewer (RGV), a multi- and cross-species working environment for the visualization, mining and comparison of published omics data sets for the reproductive science community. The system currently embeds 15 published data sets related to gametogenesis from nine model organisms. Data sets have been curated and conveniently organized into broad categories including biological topics, technologies, species and publications. RGV's modular design for both organisms and genomic tools enables users to upload and compare their data with that from the data sets embedded in the system in a cross-species manner. The RGV is freely available at http://rgv.genouest.org.

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