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Dynamics and stability of polymorphic human telomeric G-quadruplex under tension
Author(s) -
Huijuan You,
Xiangjun Zeng,
Yue Xu,
Ci Ji Lim,
Artem K. Efremov,
Anh Tuân Phan,
Jie Yan
Publication year - 2014
Publication title -
nucleic acids research
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 9.008
H-Index - 537
eISSN - 1362-4954
pISSN - 0305-1048
DOI - 10.1093/nar/gku581
Subject(s) - biology , telomere , g quadruplex , folding (dsp implementation) , dna , biophysics , energy landscape , molecule , transition (genetics) , stability (learning theory) , chemical physics , genetics , gene , biochemistry , physics , engineering , machine learning , computer science , quantum mechanics , electrical engineering
As critical DNA structures capping the human chromosome ends, the stability and structural polymorphism of human telomeric G-quadruplex (G4) have drawn increasing attention in recent years. This work characterizes the equilibrium transitions of single-molecule telomeric G4 at physiological K(+) concentration. We report three folded states of telomeric G4 with markedly different lifetime and mechanical stability. Our results show that the kinetically favored folding pathway is through a short-lived intermediate state to a longer-lived state. By examining the force dependence of transition rates, the force-dependent transition free energy landscape for this pathway is determined. In addition, an ultra-long-lived form of telomeric G4 structure with a much stronger mechanical stability is identified.

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