The UCSC Cancer Genomics Browser: update 2015 | Zendy

Mary J. Goldman | Zendy; Brian Craft | Zendy; Teresa Swatloski | Zendy; Melissa Cline | Zendy; Olena Morozova | Zendy; Mark Diekhans | Zendy; David Haussler | Zendy; Jingchun Zhu | Zendy

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The UCSC Cancer Genomics Browser: update 2015

Author(s) -

Mary J. Goldman,

Brian Craft,

Teresa Swatloski,

Melissa Cline,

Olena Morozova,

Mark Diekhans,

David Haussler,

Jingchun Zhu

Publication year - 2014

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/gku1073

Subject(s) - genome browser , upload , biology , genomics , genome , computational biology , download , visualization , web browser , the internet , bioinformatics , world wide web , genetics , computer science , gene , data mining

The UCSC Cancer Genomics Browser (https://genome-cancer.ucsc.edu/) is a web-based application that integrates relevant data, analysis and visualization, allowing users to easily discover and share their research observations. Users can explore the relationship between genomic alterations and phenotypes by visualizing various -omic data alongside clinical and phenotypic features, such as age, subtype classifications and genomic biomarkers. The Cancer Genomics Browser currently hosts 575 public datasets from genome-wide analyses of over 227,000 samples, including datasets from TCGA, CCLE, Connectivity Map and TARGET. Users can download and upload clinical data, generate Kaplan-Meier plots dynamically, export data directly to Galaxy for analysis, plus generate URL bookmarks of specific views of the data to share with others.

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