PDBsum additions | Zendy

Tjaart de Beer | Zendy; Karel Berka | Zendy; Janet M. Thornton | Zendy; Roman A. Laskowski | Zendy

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PDBsum additions

Author(s) -

Tjaart de Beer,

Karel Berka,

Janet M. Thornton,

Roman A. Laskowski

Publication year - 2013

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/gkt940

Subject(s) - biology , computational biology , annotation , dna , protein data bank , ligand (biochemistry) , genetics , protein structure , biochemistry , receptor

PDBsum, http://www.ebi.ac.uk/pdbsum, is a website providing numerous pictorial analyses of each entry in the Protein Data Bank. It portrays the structural features of all proteins, DNA and ligands in the entry, as well as depicting the interactions between them. The latest features, described here, include annotation of human protein sequences with their naturally occurring amino acid variants, dynamic graphs showing the relationships between related protein domain architectures, analyses of ligand binding clusters across different experimental determinations of the same protein, analyses of tunnels in proteins and new search options.

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