STRAW: Species TRee Analysis Web server | Zendy

Timothy I. Shaw | Zendy; Zheng Ruan | Zendy; Travis C. Glenn | Zendy; Liang Liu | Zendy

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STRAW: Species TRee Analysis Web server

Author(s) -

Timothy I. Shaw,

Zheng Ruan,

Travis C. Glenn,

Liang Liu

Publication year - 2013

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/gkt377

Subject(s) - biology , coalescent theory , tree (set theory) , phylogenetic tree , web server , visualization , gene , computational biology , data mining , genetics , computer science , the internet , combinatorics , mathematics , world wide web

The coalescent methods for species tree reconstruction are increasingly popular because they can accommodate coalescence and multilocus data sets. Herein, we present STRAW, a web server that offers workflows for reconstruction of phylogenies of species using three species tree methods-MP-EST, STAR and NJst. The input data are a collection of rooted gene trees (for STAR and MP-EST methods) or unrooted gene trees (for NJst). The output includes the estimated species tree, modified Robinson-Foulds distances between gene trees and the estimated species tree and visualization of trees to compare gene trees with the estimated species tree. The web sever is available at http://bioinformatics.publichealth.uga.edu/SpeciesTreeAnalysis/.

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