The MIGenAS integrated bioinformatics toolkit for web-based sequence analysis | Zendy

Markus Rampp | Zendy; Thomas Soddemann | Zendy; Hermann Lederer | Zendy

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The MIGenAS integrated bioinformatics toolkit for web-based sequence analysis

Author(s) -

Markus Rampp,

Thomas Soddemann,

Hermann Lederer

Publication year - 2006

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/gkl254

Subject(s) - parsing , workflow , the internet , software , biology , computer science , sequence analysis , bioinformatics , sequence (biology) , pipeline (software) , web application , process (computing) , sequence alignment , world wide web , database , programming language , peptide sequence , gene , genetics

We describe a versatile and extensible integrated bioinformatics toolkit for the analysis of biological sequences over the Internet. The web portal offers convenient interactive access to a growing pool of chainable bioinformatics software tools and databases that are centrally installed and maintained by the RZG. Currently, supported tasks comprise sequence similarity searches in public or user-supplied databases, computation and validation of multiple sequence alignments, phylogenetic analysis and protein-structure prediction. Individual tools can be seamlessly chained into pipelines allowing the user to conveniently process complex workflows without the necessity to take care of any format conversions or tedious parsing of intermediate results. The toolkit is part of the Max-Planck Integrated Gene Analysis System (MIGenAS) of the Max Planck Society available at www.migenas.org (click 'Start Toolkit').

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