BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments | Zendy

Fátima AlShahrour | Zendy; Pablo Mínguez | Zendy; Joaquín Tárraga | Zendy; David Montaner | Zendy; Eva Alloza | Zendy; Juan M. Vaquerizas | Zendy; Lucía Conde | Zendy; Christian Blaschke | Zendy; Julio Vera | Zendy; Joaquı́n Dopazo | Zendy

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BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments

Author(s) -

Fátima AlShahrour,

Pablo Mínguez,

Joaquín Tárraga,

David Montaner,

Eva Alloza,

Juan M. Vaquerizas,

Lucía Conde,

Christian Blaschke,

Julio Vera,

Joaquı́n Dopazo

Publication year - 2006

Publication title -

nucleic acids research

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 9.008

H-Index - 537

eISSN - 1362-4954

pISSN - 0305-1048

DOI - 10.1093/nar/gkl172

Subject(s) - biology , annotation , computational biology , genome , perspective (graphical) , set (abstract data type) , suite , scale (ratio) , systems biology , gene , genetics , computer science , artificial intelligence , programming language , history , physics , archaeology , quantum mechanics

We present a new version of Babelomics, a complete suite of web tools for functional analysis of genome-scale experiments, with new and improved tools. New functionally relevant terms have been included such as CisRed motifs or bioentities obtained by text-mining procedures. An improved indexing has considerably speeded up several of the modules. An improved version of the FatiScan method for studying the coordinate behaviour of groups of functionally related genes is presented, along with a similar tool, the Gene Set Enrichment Analysis. Babelomics is now more oriented to test systems biology inspired hypotheses. Babelomics can be found at http://www.babelomics.org.

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